{"id":98,"date":"2023-02-23T01:25:33","date_gmt":"2023-02-23T06:25:33","guid":{"rendered":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/?post_type=chapter&#038;p=98"},"modified":"2025-03-09T17:37:17","modified_gmt":"2025-03-09T21:37:17","slug":"mass-spectrometry-and-hyphenated-methods","status":"publish","type":"chapter","link":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/mass-spectrometry-and-hyphenated-methods\/","title":{"raw":"Mass Spectrometry and Hyphenated Methods*","rendered":"Mass Spectrometry and Hyphenated Methods*"},"content":{"raw":"&nbsp;\r\n<p style=\"font-weight: 400;text-align: justify\">Mass spectrometry (MS) measures the mass-to-charge ratio (<em>m<\/em>\/<em>z<\/em>) of gas-phase ions. These ions come from a sample of interest. The quantitative amount of each ion is measured. The ions may be <em>molecular ions<\/em>, representing the full (but ionized) structure of an analyte, or may be <em>fragment ions<\/em> from the breakdown of the molecule during ionization. A mass spectrum is a plot of signal intensity versus <em>m<\/em>\/<em>z<\/em>. When the <em>m<\/em>\/<em>z<\/em> of a molecular ion is not sufficient to unambiguously identify an analyte, the fragmentation pattern (<em>i.e.<\/em> molecular weights of different ionized pieces of the analyte) observed in a mass spectrum may enable unique identification.<\/p>\r\n<p style=\"font-weight: 400;text-align: justify\">Mass spectrometers measure the exact mass of an ion. As such, mass spectrometers are sensitive to isotopes (<em>e.g.\u00a0<\/em>methane, CH<sub>4<\/sub>, is 16.034 amu with <sup>12<\/sup>C and 17.035 amu with <sup>13<\/sup>C) and mass spectra will have isotopic peaks. Molecular weights that differ by less than one atomic mass unit can be resolved.<\/p>\r\n\r\n<h2>Instrument Design<\/h2>\r\n<p style=\"font-weight: 400;text-align: justify\">The main components of a mass spectrometer are its ionization source, which converts a condensed-phase sample to gaseous ions; its mass analyzer (<em>e.g.<\/em> quadrupole, time-of-flight), which separates ions based on their <em>m<\/em>\/<em>z<\/em>; and its detector, which quantifies the ions for each <em>m<\/em>\/<em>z<\/em> ratio.<\/p>\r\n<p style=\"font-weight: 400;text-align: justify\">Ionization sources and analyzers are discussed more in Chapters <a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/ms-ionization-sources\/\">26<\/a> and <a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/ms-mass-analyzers\/\">27<\/a>, respectively.<\/p>\r\n<p style=\"font-weight: 400;text-align: justify\"><strong>Detectors.<\/strong>\u00a0The ion detectors used for MS are typically electron multipliers. For example, a positive ion from the analyzer strikes a conversion cathode and ejects electrons from the impact. An applied potential gradient then accelerates these electrons between discrete dynodes, along a continuous horn-shaped dynode, or within a plate-like array of microchannels \u00a0to produce more secondary electrons with each impact. The amplification is up to 10<sup>6<\/sup>-10<sup>8<\/sup>-fold and produces a measurable electrical current at an anode for an ion strike.\u00a0Alternatively, a microchannel plate may be coupled to a phosphorescent screen, where light is produced when the secondary electrons hit the screen. The light is imaged on a CCD camera.<\/p>\r\n&nbsp;\r\n\r\n<img class=\"aligncenter wp-image-1244\" src=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-content\/uploads\/sites\/1846\/2023\/02\/Ch-25-Textbook-fig-b-scaled.jpg\" alt=\"\" width=\"800\" height=\"317\" \/>\r\n<h2>Hyphenated Techniques<\/h2>\r\n<p style=\"font-weight: 400;text-align: justify\">In addition to its utility as a standalone technique, mass spectrometry (MS) is frequently combined with other analytical techniques. These methods are called <em>hyphenated techniques<\/em> and include <strong>GC-MS<\/strong> and <strong>LC-MS<\/strong>, among others. The MS serves as a detector for the chromatography. It is the largest and most costly chromatography detector, but provides by far the most information about analyte identities, as well as the best sensitivity for a wide scope of analytes.<\/p>\r\n<p style=\"font-weight: 400;text-align: justify\">The technical challenge with hyphenated methods is to go from the relatively high pressure of the LC or GC to the vacuum required to separate ions based on <em>m<\/em>\/<em>z<\/em>. The interface between the ionization source and analyzer must solve this challenge. This high pressure-to-vacuum transition is usually accomplished through a series of skimmers between chambers of progressively higher vacuum. Ions are electrostatically directed through small apertures while neutral molecules are removed by vacuum pumps.<\/p>\r\n<p style=\"font-weight: 400;text-align: justify\">MS can also be combined with itself in the form of <strong><em>tandem mass spectrometry<\/em><\/strong> (abbreviated MS\/MS or MS2). The first MS analyzer selects for an ion of particular <em>m<\/em>\/<em>z<\/em>, which is then fragmented, with the fragment <em>m<\/em>\/<em>z<\/em> to be detected by the second MS analyzer.<\/p>\r\n\r\n<h2>Molecular and Elemental Analysis<\/h2>\r\n<p style=\"font-weight: 400;text-align: justify\">Although the above discussion has focused on molecular analysis, MS can also be used for elemental analysis in the form of <strong>ICP-MS<\/strong>. The ICP produces atoms that the MS then analyzes based on <em>m<\/em>\/<em>z<\/em>. Detection limits for elements are lower than those for ICP-OES or ET-AAS in most cases.<\/p>\r\n&nbsp;\r\n\r\n<hr \/>\r\n\r\n<h3>Connections<\/h3>\r\n<ul>\r\n \t<li>The electron multiplier ion detectors operate analogously to a PMT (<a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/photodetectors\/\">Ch. 5<\/a>), with the main difference being that an incident ion (rather than incident photon) produces the first electrons in the amplification cascade.<\/li>\r\n \t<li>MS is useful for molecular analyte detection at the end of an LC (<a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/hplc-and-uplc\/\">Ch. 20<\/a>) or GC column (<a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/gas-chromatography\/\">Ch. 21<\/a>), or CE capillary (<a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/gel-and-capillary-electrophoresis\/\">Ch. 23<\/a>).<\/li>\r\n \t<li>The sample introduction and atomization in ICP-OES (<a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/atomic-absorption-and-emission\/\">Ch. 10<\/a>) and ICP-MS instruments are analogous.<\/li>\r\n<\/ul>\r\n<h3>Post-Reading Questions<\/h3>\r\n<ol>\r\n \t<li>Calculate the mass-to-charge (<em>m\/z<\/em>) ratio for an acetate ion made up of only <sup>12<\/sup>C, <sup>16<\/sup>O, and <sup>1<\/sup>H. You will need to look up a table of exact atomic masses online.<\/li>\r\n \t<li>What are two reasons that a 100% pure sample of a single molecule is unlikely to give a single peak in a mass spectrum?<\/li>\r\n \t<li>What are the main components of a mass spectrometer?<\/li>\r\n \t<li>Which of the following is a typical internal pressure for a MS: 10<sup>\u20136<\/sup> kPa or 101 kPa?<\/li>\r\n \t<li>What is a substantial technical challenge for hyphenated techniques?<\/li>\r\n<\/ol>\r\n<h3>Topic Learning Objectives<\/h3>\r\nThe chapter is a primer for the following learning objectives, which will be covered in lecture and\/or with additional assigned reading:\r\n<ul>\r\n \t<li>Sketch a generic mass spectrum.<\/li>\r\n \t<li>Discuss how MS provides structural information.<\/li>\r\n \t<li>Describe how to distinguish between singly and doubly charged organic ions, and between isobars.<\/li>\r\n \t<li>Draw simple block diagrams for mass spectrometers and LC-MS and GC-MS instruments.<\/li>\r\n \t<li>Explain why high vacuum is necessary and how it is practically achieved in instruments.<\/li>\r\n \t<li>Discuss different strategies for tandem MS measurements.<\/li>\r\n<\/ul>\r\n\r\n<hr \/>\r\n<p style=\"text-align: justify\"><\/p>","rendered":"<p>&nbsp;<\/p>\n<p style=\"font-weight: 400;text-align: justify\">Mass spectrometry (MS) measures the mass-to-charge ratio (<em>m<\/em>\/<em>z<\/em>) of gas-phase ions. These ions come from a sample of interest. The quantitative amount of each ion is measured. The ions may be <em>molecular ions<\/em>, representing the full (but ionized) structure of an analyte, or may be <em>fragment ions<\/em> from the breakdown of the molecule during ionization. A mass spectrum is a plot of signal intensity versus <em>m<\/em>\/<em>z<\/em>. When the <em>m<\/em>\/<em>z<\/em> of a molecular ion is not sufficient to unambiguously identify an analyte, the fragmentation pattern (<em>i.e.<\/em> molecular weights of different ionized pieces of the analyte) observed in a mass spectrum may enable unique identification.<\/p>\n<p style=\"font-weight: 400;text-align: justify\">Mass spectrometers measure the exact mass of an ion. As such, mass spectrometers are sensitive to isotopes (<em>e.g.\u00a0<\/em>methane, CH<sub>4<\/sub>, is 16.034 amu with <sup>12<\/sup>C and 17.035 amu with <sup>13<\/sup>C) and mass spectra will have isotopic peaks. Molecular weights that differ by less than one atomic mass unit can be resolved.<\/p>\n<h2>Instrument Design<\/h2>\n<p style=\"font-weight: 400;text-align: justify\">The main components of a mass spectrometer are its ionization source, which converts a condensed-phase sample to gaseous ions; its mass analyzer (<em>e.g.<\/em> quadrupole, time-of-flight), which separates ions based on their <em>m<\/em>\/<em>z<\/em>; and its detector, which quantifies the ions for each <em>m<\/em>\/<em>z<\/em> ratio.<\/p>\n<p style=\"font-weight: 400;text-align: justify\">Ionization sources and analyzers are discussed more in Chapters <a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/ms-ionization-sources\/\">26<\/a> and <a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/ms-mass-analyzers\/\">27<\/a>, respectively.<\/p>\n<p style=\"font-weight: 400;text-align: justify\"><strong>Detectors.<\/strong>\u00a0The ion detectors used for MS are typically electron multipliers. For example, a positive ion from the analyzer strikes a conversion cathode and ejects electrons from the impact. An applied potential gradient then accelerates these electrons between discrete dynodes, along a continuous horn-shaped dynode, or within a plate-like array of microchannels \u00a0to produce more secondary electrons with each impact. The amplification is up to 10<sup>6<\/sup>-10<sup>8<\/sup>-fold and produces a measurable electrical current at an anode for an ion strike.\u00a0Alternatively, a microchannel plate may be coupled to a phosphorescent screen, where light is produced when the secondary electrons hit the screen. The light is imaged on a CCD camera.<\/p>\n<p>&nbsp;<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter wp-image-1244\" src=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-content\/uploads\/sites\/1846\/2023\/02\/Ch-25-Textbook-fig-b-scaled.jpg\" alt=\"\" width=\"800\" height=\"317\" srcset=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-content\/uploads\/sites\/1846\/2023\/02\/Ch-25-Textbook-fig-b-scaled.jpg 2560w, https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-content\/uploads\/sites\/1846\/2023\/02\/Ch-25-Textbook-fig-b-300x119.jpg 300w, https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-content\/uploads\/sites\/1846\/2023\/02\/Ch-25-Textbook-fig-b-1024x406.jpg 1024w, https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-content\/uploads\/sites\/1846\/2023\/02\/Ch-25-Textbook-fig-b-768x304.jpg 768w, https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-content\/uploads\/sites\/1846\/2023\/02\/Ch-25-Textbook-fig-b-1536x608.jpg 1536w, https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-content\/uploads\/sites\/1846\/2023\/02\/Ch-25-Textbook-fig-b-2048x811.jpg 2048w, https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-content\/uploads\/sites\/1846\/2023\/02\/Ch-25-Textbook-fig-b-65x26.jpg 65w, https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-content\/uploads\/sites\/1846\/2023\/02\/Ch-25-Textbook-fig-b-225x89.jpg 225w, https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-content\/uploads\/sites\/1846\/2023\/02\/Ch-25-Textbook-fig-b-350x139.jpg 350w\" sizes=\"auto, (max-width: 800px) 100vw, 800px\" \/><\/p>\n<h2>Hyphenated Techniques<\/h2>\n<p style=\"font-weight: 400;text-align: justify\">In addition to its utility as a standalone technique, mass spectrometry (MS) is frequently combined with other analytical techniques. These methods are called <em>hyphenated techniques<\/em> and include <strong>GC-MS<\/strong> and <strong>LC-MS<\/strong>, among others. The MS serves as a detector for the chromatography. It is the largest and most costly chromatography detector, but provides by far the most information about analyte identities, as well as the best sensitivity for a wide scope of analytes.<\/p>\n<p style=\"font-weight: 400;text-align: justify\">The technical challenge with hyphenated methods is to go from the relatively high pressure of the LC or GC to the vacuum required to separate ions based on <em>m<\/em>\/<em>z<\/em>. The interface between the ionization source and analyzer must solve this challenge. This high pressure-to-vacuum transition is usually accomplished through a series of skimmers between chambers of progressively higher vacuum. Ions are electrostatically directed through small apertures while neutral molecules are removed by vacuum pumps.<\/p>\n<p style=\"font-weight: 400;text-align: justify\">MS can also be combined with itself in the form of <strong><em>tandem mass spectrometry<\/em><\/strong> (abbreviated MS\/MS or MS2). The first MS analyzer selects for an ion of particular <em>m<\/em>\/<em>z<\/em>, which is then fragmented, with the fragment <em>m<\/em>\/<em>z<\/em> to be detected by the second MS analyzer.<\/p>\n<h2>Molecular and Elemental Analysis<\/h2>\n<p style=\"font-weight: 400;text-align: justify\">Although the above discussion has focused on molecular analysis, MS can also be used for elemental analysis in the form of <strong>ICP-MS<\/strong>. The ICP produces atoms that the MS then analyzes based on <em>m<\/em>\/<em>z<\/em>. Detection limits for elements are lower than those for ICP-OES or ET-AAS in most cases.<\/p>\n<p>&nbsp;<\/p>\n<hr \/>\n<h3>Connections<\/h3>\n<ul>\n<li>The electron multiplier ion detectors operate analogously to a PMT (<a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/photodetectors\/\">Ch. 5<\/a>), with the main difference being that an incident ion (rather than incident photon) produces the first electrons in the amplification cascade.<\/li>\n<li>MS is useful for molecular analyte detection at the end of an LC (<a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/hplc-and-uplc\/\">Ch. 20<\/a>) or GC column (<a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/gas-chromatography\/\">Ch. 21<\/a>), or CE capillary (<a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/gel-and-capillary-electrophoresis\/\">Ch. 23<\/a>).<\/li>\n<li>The sample introduction and atomization in ICP-OES (<a href=\"https:\/\/pressbooks.bccampus.ca\/instanchem1\/chapter\/atomic-absorption-and-emission\/\">Ch. 10<\/a>) and ICP-MS instruments are analogous.<\/li>\n<\/ul>\n<h3>Post-Reading Questions<\/h3>\n<ol>\n<li>Calculate the mass-to-charge (<em>m\/z<\/em>) ratio for an acetate ion made up of only <sup>12<\/sup>C, <sup>16<\/sup>O, and <sup>1<\/sup>H. You will need to look up a table of exact atomic masses online.<\/li>\n<li>What are two reasons that a 100% pure sample of a single molecule is unlikely to give a single peak in a mass spectrum?<\/li>\n<li>What are the main components of a mass spectrometer?<\/li>\n<li>Which of the following is a typical internal pressure for a MS: 10<sup>\u20136<\/sup> kPa or 101 kPa?<\/li>\n<li>What is a substantial technical challenge for hyphenated techniques?<\/li>\n<\/ol>\n<h3>Topic Learning Objectives<\/h3>\n<p>The chapter is a primer for the following learning objectives, which will be covered in lecture and\/or with additional assigned reading:<\/p>\n<ul>\n<li>Sketch a generic mass spectrum.<\/li>\n<li>Discuss how MS provides structural information.<\/li>\n<li>Describe how to distinguish between singly and doubly charged organic ions, and between isobars.<\/li>\n<li>Draw simple block diagrams for mass spectrometers and LC-MS and GC-MS instruments.<\/li>\n<li>Explain why high vacuum is necessary and how it is practically achieved in instruments.<\/li>\n<li>Discuss different strategies for tandem MS measurements.<\/li>\n<\/ul>\n<hr \/>\n<p style=\"text-align: justify\">\n","protected":false},"author":1796,"menu_order":1,"template":"","meta":{"pb_show_title":"on","pb_short_title":"","pb_subtitle":"","pb_authors":[],"pb_section_license":""},"chapter-type":[],"contributor":[],"license":[],"class_list":["post-98","chapter","type-chapter","status-publish","hentry"],"part":96,"_links":{"self":[{"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/pressbooks\/v2\/chapters\/98","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/pressbooks\/v2\/chapters"}],"about":[{"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/wp\/v2\/types\/chapter"}],"author":[{"embeddable":true,"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/wp\/v2\/users\/1796"}],"version-history":[{"count":25,"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/pressbooks\/v2\/chapters\/98\/revisions"}],"predecessor-version":[{"id":630,"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/pressbooks\/v2\/chapters\/98\/revisions\/630"}],"part":[{"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/pressbooks\/v2\/parts\/96"}],"metadata":[{"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/pressbooks\/v2\/chapters\/98\/metadata\/"}],"wp:attachment":[{"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/wp\/v2\/media?parent=98"}],"wp:term":[{"taxonomy":"chapter-type","embeddable":true,"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/pressbooks\/v2\/chapter-type?post=98"},{"taxonomy":"contributor","embeddable":true,"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/wp\/v2\/contributor?post=98"},{"taxonomy":"license","embeddable":true,"href":"https:\/\/pressbooks.bccampus.ca\/instanchem1\/wp-json\/wp\/v2\/license?post=98"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}